You can mark the payments as not to be output by
1. Open the Practice > Click on Transactions > Create EFT Batch
2. Left hand click on the first transaction you want to mark as not to be outputted then Shift Left hand click on the last transactions so all the transactions in between are blocked. Then right hand click and select Update item(s) as not to be output.
The transactions will no longer appear on your home page as payments to be output.